Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| LGG | rs57788514 | chr2:29247660 | A/G | 0.000153 | 403 | 14.53 | 21.13 | 4.15 | KM Plot |
| LGG | rs5781086 | chr1:219168078 | TA/T | 0.000155 | 404 | 14.8 | 18.03 | 21.3 | KM Plot |
| LGG | rs57831293 | chr2:55652253 | G/GAA | 3.82E-7 | 396 | 4.6 | 17.07 | 15.25 | KM Plot |
| LGG | rs5809634 | chr14:74344316 | G/GTTT | 0 | 406 | 15.03 | 17.03 | 1.23 | KM Plot |
| LGG | rs58204112 | chr14:74359417 | G/C | 1.39E-7 | 405 | 14.67 | 17.2 | 3.93 | KM Plot |
| LGG | rs58220155 | chr11:3003053 | G/A | 0.000225 | 400 | 15.57 | 13.23 | 11.8 | KM Plot |
| LGG | rs58237753 | chr6:36036355 | T/G | 1.03E-9 | 405 | 15.57 | 15.18 | 6.15 | KM Plot |
| LGG | rs58266190 | chr2:86877975 | A/T | 0 | 404 | 15.9 | 13.23 | 6.38 | KM Plot |
| LGG | rs58270618 | chr2:207065729 | G/T | 2.22E-16 | 395 | 14.92 | 18.2 | 2.25 | KM Plot |
| LGG | rs58287029 | chr3:168565789 | A/C | 2.71E-5 | 401 | 15.6 | 12.9 | 4.1 | KM Plot |
| LGG | rs58351851 | chr9:14641428 | A/C | 6.87E-5 | 399 | 15.37 | 17.23 | 4.87 | KM Plot |
| LGG | rs58371178 | chr3:168558660 | C/T | 2.99E-5 | 404 | 15.57 | 13.7 | 4.1 | KM Plot |
| LGG | rs58390233 | chr6:36005100 | G/A | 9.5E-10 | 407 | 15.6 | 15.17 | 6.15 | KM Plot |
| LGG | rs58452299 | chr5:80501060 | C/T | 9.66E-6 | 392 | 15.37 | 16.42 | 3.2 | KM Plot |
| LGG | rs58578551 | chr12:102303950 | G/A | 3.8E-6 | 396 | 14.4 | 18.97 | 20.9 | KM Plot |